NIS (NeuroImaging Software) package version 3.5    


Changes from NIS 3.4

-- niscorrect 
	-- changed to accept analyze format input/output 
	-- bug fix in zeroing out initial outimg of outlier stats
	-- changed threshold logic so now timecourses above thresh
	   are not detrended and auxiliary data is not updated for them.
	   As before, original timecourse is output for timecourses above
	   threshold.  Before, the detrend was calculated but not output.

-- make_analyze changes
   -- bug fix: -f parameter for passing FOV was broken (ignored) now fixed
   -- %05d printf syntax changed to %05s for LINUX compatibility
   -- commented out awk lines added as option to replace nawk calls on LINUX

-- nisoverlay: changed file size checking to permit non square images when
   func and struct size the same (no shrink/expand necessary)

-- nisair: added 3D registration with 3 DOF  -m 23 model.
           (Changes to nisair.c and Nisair.java)

-- added nismakeimg for Jason Chein, not ready for general use

-- nisthreshold: Sylvain rewrote nisthresh so that thresholds are computed
                 independently for each image even when a filelist is passed.
                 This eliminates the filelist bug.  
                 Changes to ignore voxels with intensities less than 0, to
                 handle intensities greater than 32767, and to deal with
                 constant images that have a 1 bin histogram correctly.

-- niscrit now prints out the name (in terms of default A B C... factors) of
	the main or interaction effect for which it is printing critical values 

-- nisanova:  
	-- optionally takes a mask file to exclude voxels from anova computation
	-- GUI has option to run unixstat anova on 1 voxel timecourse
	-- GUI has option to create afni format F maps thru call to makebucket